Bartoš J., Paux E., Kofler R., Havránková M., Kopecký D., Suchánková P., Šafář J., Šimková H., Town C., Lelley T., Feuillet C., Doležel J. A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R. BMC Plant Biology. 2008.

Šimková H., Šafář J., Suchánková P., Kovářová P., Bartoš J., Kubaláková M., Janda J., Číhalíková J., Mago R., Lelley T., Doležel J. A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (IRS). BMC Genomics. 2008.

Paux E., Sourdille P., Salse J., Saintenac C., Choulet F., Leroy P., Korol A., Michalak M., Kianian S., Spielmeyer W., Lagudah E., Somers D., Kilian A., Alaux M., Vautrin S., Berges H., Eversole K., Appels R., Šafář J., Šimková H., Doležel J., Bernard m., Feuillet C. A physical map of the 1-gigabase bread wheat chromosome 3B. Science. 2008.

Šimková H., Stevensson J., Condamine P., Hřibová E., Suchánková P., Bhat P., Bartoš J., Šafář J., Close T., Doležel J. Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley. BMC Genomics. 2008.

Kofler R., Bartoš J., Gong L., Stift G., Suchánková P., Šimková H., Berenyi M., Burg K., Doležel J., Lelley T. Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1. Theorethical and Applied Genetics. 2008.

Šimková H., Janda J., Hřibová E., Šafář J., Doležel J. Cot-based cloning and sequencing of the short arm of wheat chromosome 1B. Plant, Soil and Environment. 2007.

Janda J., Šafář J., Kubaláková M., Bartoš J., Kovářová P., Pateyron S., Číhalíková J., Sourdille P., Šimková H., Faivre-Rampant P., Hřibová E., Bernard M., Lukaszewski A., Doležel J., Chalhoub B. Advanced resources for plant genomics: a BAC library specific for the short arm of wheat chromosome 1B. Plant Journal. 2006.

Doležel J., Šimková H. Sekvenční komplex rostlinných genomů. Bulletin České společnosti experimentální biologie rostlin. 2006.

ŠIMKOVÁ H., Valárik M., Hřibová E., Šafář J., Doležel J. Characterization of newly isolated repetitive DNA sequences in Musa. Chromosome Research. 2001.

Doležel J., Kubaláková M., Suchánková P., Kovářová P., Bartoš J., Šimková H. Chromosome analysis and sorting. Flow Cytometry with Plant Cells. 2007.

Suchánková P., Šimková H., Svensson JT., Hřibová E., Condamine P., Bhat P., Bartoš J., Šafář J., Close T., Doležel J. Production of microgram amounts of DNA from flow-sorted plant chromosomes. Chromosome Research. 2007.

Šimková H., Šafář J., Suchánková P., Kovářová P., Bartoš J., Janda J., Kofler R., Kubaláková M., Číhalíková J., Lelley T., Doležel J. A new BAC resource for targeted analysis of the short arm of rye chromosome 1R (1RS). Abstracts of the ITMI Workshop and ACPFG Genomics Symposium. 2006.

Šafář J., Šimková H., Suchánková P., Kovářová P., Bartoš J., Janda J., Kubaláková M., Číhalíková J., Lelley T., Doležel J. A novel resource for genomics of rye and wheat: BAC library specific for the short arm of chromosome 1R (1RS). Abstracts of the International Conference ?Plant and Animal Genome XIV?. 2006.

Kovářová P., Šafář J., Šimková H., Suchánková P., Bartoš J., Janda J., Kubaláková M., Číhalíková J., Lelley T., Doležel J. Developement of BAC resources for targeted analysis of the short arm of chromosome 1R (1RS). Abstract of the 2nd Congress of the International Cytogenetics and Genome Society. 2006.

Suchánková P., Kubaláková M., Kovářová P., Bartoš J., Číhalíková J., Šimková H., Takashi ER., Doležel J. Development of flow cytogenetics for barley (Hordeum vulgare L.). Abstracts of the 2nd Congress of the International Cytogenetics and Genome Society. 2006.

Doležel J., Kubaláková M., Šafář J., Bartoš J., Suchánková P., Kovářová P., Číhalíková J., Šimková H. Chromosome sorting facilitates analysis of barley, rye and wheat genomes. Abstracts of the ITMI Workshop and ACPFG Genomics Symposium. 2006.

Doležel J., Kubaláková M., Šafář J., Suchánková P., Kovářová P., Číhalíková J., Šimková H. Chromosome sorting to facilitate genomics of barley, rye and wheat. Abstracts of the International Conference ?Plant and Animal Genome XIV?. 2006.

Doležel J., Hřibová E., Šimková H., Doleželová M. Molecular cytogenetic mapping as a tool to characterize genetic diversity and induced mutants in banana. Molecular Tools for Quality Improvement in Vegetatively Propagated Crops Including Banana and Cassava. Report of the First Research Co-ordination Meeting of FAO/IAEA. 2006.

Doležel J., Lysák M., Doleželová M., Valárik M., Šimková H., Vrána J. Analysis of Musa genome using flow cytometry and molecular cytogenetics. Cellular Biology and Biotechnology Including Mutation Techniques for Creation of New Useful Banana Genotypes. Report of the Third FAO/IAEA Research Co-ordination Meeting. 2001.